Linked TCGA: Linked TCGA

The Cancer Genome Atlas Database aims to characterize the changes that occur in genes due to cancer. Knowledge about such changes can be of central nature when aiming to predict the life expectancy as well as the medication or sequence of medication that should be administered to a patient to ensure his/her survival. So far, experts that needed this data had to wait in long data queues and write dedicated tools to analyze this data.

Download Homepage

The 20.4 billion triples in LinkedTCGA remedy these problems by being a five-star Linked Data representation of the data made publicly available by TCGA. Researchers now need solely a small set of SPARQL queries to gather data represented in a standard format (RDF). Linked TCGA publishes different types of data (clinical, exon, methylation, miRNA etc.). The data to each tumor is have distributed into 3 different SPARQL endpoints. The federated query engine is powered by TopFed, a dedicated engine for the TCGA data that was shown to outperform state-of-the-art approaches significantly (see publications). More information on the LinkedTCGA data can be found on the project website.

Project Team

Publications

by (Editors: ) [BibTex of ]

News

DBpedia @ SEMANTiCS 2017 ( 2017-09-04T15:25:14+02:00 by Sandra Bartsch)

2017-09-04T15:25:14+02:00 by Sandra Bartsch

We are happy to invite you to the 10th DBpedia Community Meeting which will be held in Amsterdam. During the SEMANTiCS 2017, Sep 11-14, the DBpedia Community will get together on the 14th of September for the DBpdia Day. Read more about "DBpedia @ SEMANTiCS 2017"

PRESS RELEASE: Amsterdam​ ​-​ ​this​ ​year’s​ ​hotspot​ ​​on Linked​ ​Data​ ​Strategies​ ​&​ ​Practices ( 2017-09-04T11:58:06+02:00 by Sandra Bartsch)

2017-09-04T11:58:06+02:00 by Sandra Bartsch

September 11-14, 2017 international experts from science and industry demonstrate the business value of smart data services at SEMANTiCS 2017 Experts from science and industry meet at Europe’s biggest Linked Data and Semantic Web event to present and discuss latest … Continue reading → Read more about "PRESS RELEASE: Amsterdam​ ​-​ ​this​ ​year’s​ ​hotspot​ ​​on Linked​ ​Data​ ​Strategies​ ​&​ ​Practices"

AKSW Colloquium, 01.09.2017, IDOL: Comprehensive & Complete LOD Insights ( 2017-08-28T17:24:03+02:00 Gustavo Publio)

2017-08-28T17:24:03+02:00 Gustavo Publio

At the AKSW Colloquium on Friday 1st of September, at 10:40 AM there will be a paper presentation by Gustavo Publio. Read more about "AKSW Colloquium, 01.09.2017, IDOL: Comprehensive & Complete LOD Insights"

AKSW at ISWC2017 ( 2017-07-30T05:57:57+02:00 Muhammad Saleem)

2017-07-30T05:57:57+02:00 Muhammad Saleem

We are very pleased to announce that AKSW will be presenting 2 papers at ISWC 2017, which will be held on 21-24 October in Vienna, Austria. The demo and workshops papers have to be announced. Read more about "AKSW at ISWC2017"

AKSW Colloquium, 07.07.2017, Two paper presentations concerning Link Discovery and Knowledge Base Reasoning ( 2017-07-06T21:24:36+02:00 by Daniel Obraczka)

2017-07-06T21:24:36+02:00 by Daniel Obraczka

At the AKSW Colloquium on Friday 7th of July, at 10:40 AM there will be two paper presentations concerning genetic algorithms to learn linkage rules, and differentiable learning of logical rules for knowledge base reasoning. Read more about "AKSW Colloquium, 07.07.2017, Two paper presentations concerning Link Discovery and Knowledge Base Reasoning"